"""An extensible ASCII table reader and writer.
latex.py:
Classes to read and write LaTeX tables
:Copyright: Smithsonian Astrophysical Observatory (2011)
:Author: Tom Aldcroft (aldcroft@head.cfa.harvard.edu)
"""
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import re
from . import core
latexdicts ={'AA': {'tabletype': 'table',
'header_start': r'\hline \hline', 'header_end': r'\hline',
'data_end': r'\hline'},
'doublelines': {'tabletype': 'table',
'header_start': r'\hline \hline', 'header_end': r'\hline\hline',
'data_end': r'\hline\hline'},
'template': {'tabletype': 'tabletype', 'caption': 'caption',
'col_align': 'col_align', 'preamble': 'preamble',
'header_start': 'header_start',
'header_end': 'header_end', 'data_start': 'data_start',
'data_end': 'data_end', 'tablefoot': 'tablefoot',
'units': {'col1': 'unit of col1', 'col2': 'unit of col2'}}
}
def add_dictval_to_list(adict, key, alist):
'''add a value from a dictionary to a list
:param adict: dictionary
:param key: key of value
:param list: list where value should be added
'''
if key in adict.keys():
if type(adict[key]) == str:
alist.append(adict[key])
else:
alist.extend(adict[key])
def find_latex_line(lines, latex):
'''Find the first line which matches a patters
:param lines: list of strings
:param latex: search pattern
:returns: line number or None, if no match was found
'''
re_string = re.compile(latex.replace('\\', '\\\\'))
for i,line in enumerate(lines):
if re_string.match(line):
return i
else:
return None
class LatexHeader(core.BaseHeader):
header_start = r'\begin{tabular}'
def start_line(self, lines):
line = find_latex_line(lines, self.header_start)
if line:
return line + 1
else:
return None
def write(self, lines):
if not 'col_align' in self.latex.keys():
self.latex['col_align'] = len(self.cols) * 'c'
lines.append(r'\begin{' + self.latex['tabletype'] + r'}')
add_dictval_to_list(self.latex, 'preamble', lines)
if 'caption' in self.latex.keys():
lines.append(r'\caption{' + self.latex['caption'] +'}')
lines.append(self.header_start + r'{' + self.latex['col_align'] + r'}')
add_dictval_to_list(self.latex, 'header_start', lines)
lines.append(self.splitter.join([x.name for x in self.cols]))
if 'units' in self.latex.keys():
lines.append(self.splitter.join([self.latex['units'].get(x.name, ' ')
for x in self.cols]))
add_dictval_to_list(self.latex, 'header_end', lines)
class LatexData(core.BaseData):
data_start = None
data_end = r'\end{tabular}'
def start_line(self, lines):
if self.data_start:
return find_latex_line(lines, self.data_start)
else:
return self.header.start_line(lines) + 1
def end_line(self, lines):
if self.data_end:
return find_latex_line(lines, self.data_end)
else:
return None
def write(self, lines):
add_dictval_to_list(self.latex, 'data_start', lines)
core.BaseData.write(self, lines)
add_dictval_to_list(self.latex, 'data_end', lines)
lines.append(self.data_end)
add_dictval_to_list(self.latex, 'tablefoot', lines)
lines.append(r'\end{' + self.latex['tabletype'] + '}')
class LatexSplitter(core.BaseSplitter):
'''Split LaTeX table date. Default delimiter is `&`.
'''
delimiter = '&'
def process_line(self, line):
"""Remove whitespace at the beginning or end of line. Also remove
\\ at end of line"""
line = line.split('%')[0]
line = line.strip()
if line[-2:] ==r'\\':
line = line.strip(r'\\')
else:
raise core.InconsistentTableError(r'Lines in LaTeX table have to end with \\')
return line
def process_val(self, val):
"""Remove whitespace and {} at the beginning or end of value."""
val = val.strip()
if val and (val[0] == '{') and (val[-1] == '}'):
val = val[1:-1]
return val
def join(self, vals):
'''Join values together and add a few extra spaces for readability'''
delimiter = ' ' + self.delimiter + ' '
return delimiter.join(x.strip() for x in vals) + r' \\'
[docs]class Latex(core.BaseReader):
r'''Write and read LaTeX tables.
This class implements some LaTeX specific commands. Its main
purpose is to write out a table in a form that LaTeX can compile. It
is beyond the scope of this class to implement every possible LaTeX
command, instead the focus is to generate a syntactically valid
LaTeX tables.
This class can also read simple LaTeX tables (one line per table
row, no ``\multicolumn`` or similar constructs), specifically, it
can read the tables that it writes.
Reading a LaTeX table, the following keywords are accepted:
**ignore_latex_commands** :
Lines starting with these LaTeX commands will be treated as comments (i.e. ignored).
When writing a LaTeX table, the some keywords can customize the
format. Care has to be taken here, because python interprets ``\\``
in a string as an escape character. In order to pass this to the
output either format your strings as raw strings with the ``r``
specifier or use a double ``\\\\``.
Examples::
caption = r'My table \label{mytable}'
caption = 'My table \\\\label{mytable}'
**latexdict** : Dictionary of extra parameters for the LaTeX output
* tabletype : used for first and last line of table.
The default is ``\\begin{table}``. The following would generate a table,
which spans the whole page in a two-column document::
ascii.write(data, sys.stdout, Writer = ascii.Latex,
latexdict = {'tabletype': 'table*'})
* col_align : Alignment of columns
If not present all columns will be centered.
* caption : Table caption (string or list of strings)
This will appear above the table as it is the standard in
many scientific publications. If you prefer a caption below
the table, just write the full LaTeX command as
``latexdict['tablefoot'] = r'\caption{My table}'``
* preamble, header_start, header_end, data_start, data_end, tablefoot: Pure LaTeX
Each one can be a string or a list of strings. These strings
will be inserted into the table without any further
processing. See the examples below.
* units : dictionary of strings
Keys in this dictionary should be names of columns. If
present, a line in the LaTeX table directly below the column
names is added, which contains the values of the
dictionary. Example::
from astropy.io import ascii
data = {'name': ['bike', 'car'], 'mass': [75,1200], 'speed': [10, 130]}
ascii.write(data, Writer=ascii.Latex,
latexdict = {'units': {'mass': 'kg', 'speed': 'km/h'}})
If the column has no entry in the `units` dictionary, it defaults
to `' '`.
Run the following code to see where each element of the
dictionary is inserted in the LaTeX table::
from astropy.io import ascii
data = {'cola': [1,2], 'colb': [3,4]}
ascii.write(data, Writer=ascii.Latex, latexdict=ascii.latex.latexdicts['template'])
Some table styles are predefined in the dictionary
``ascii.latex.latexdicts``. The following generates in table in
style preferred by A&A and some other journals::
ascii.write(data, Writer=ascii.Latex, latexdict=ascii.latex.latexdicts['AA'])
As an example, this generates a table, which spans all columns
and is centered on the page::
ascii.write(data, Writer=ascii.Latex, col_align='|lr|',
latexdict={'preamble': r'\begin{center}',
'tablefoot': r'\end{center}',
'tabletype': 'table*'})
**caption** : Set table caption
Shorthand for::
latexdict['caption'] = caption
**col_align** : Set the column alignment.
If not present this will be auto-generated for centered
columns. Shorthand for::
latexdict['col_align'] = col_align
'''
def __init__(self, ignore_latex_commands = ['hline', 'vspace', 'tableline'], latexdict = {}, caption ='', col_align = None):
core.BaseReader.__init__(self)
self.header = LatexHeader()
self.data = LatexData()
self.header.splitter = LatexSplitter()
self.data.splitter = LatexSplitter()
self.data.header = self.header
self.header.data = self.data
self.latex = {}
self.latex['tabletype'] = 'table'
# The latex dict drives the format of the table and needs to be shared
# with data and header
self.header.latex = self.latex
self.data.latex = self.latex
self.latex['tabletype'] = 'table'
self.latex.update(latexdict)
if caption: self.latex['caption'] = caption
if col_align: self.latex['col_align'] = col_align
self.ignore_latex_commands = ignore_latex_commands
self.header.comment = '%|' + '|'.join([r'\\' + command for command in self.ignore_latex_commands])
self.data.comment = self.header.comment
[docs] def write(self, table=None):
self.header.start_line = None
self.data.start_line = None
return core.BaseReader.write(self, table=table)
class AASTexHeader(LatexHeader):
'''In a `deluxetable` some header keywords differ from standard LaTeX.
This header is modified to take that into account.
'''
header_start = r'\tablehead'
def start_line(self, lines):
return find_latex_line(lines, r'\tablehead')
def write(self, lines):
if not 'col_align' in self.latex.keys():
self.latex['col_align'] = len(self.cols) * 'c'
lines.append(r'\begin{' + self.latex['tabletype'] + r'}{' + self.latex['col_align'] + r'}')
add_dictval_to_list(self.latex, 'preamble', lines)
if 'caption' in self.latex.keys():
lines.append(r'\tablecaption{' + self.latex['caption'] +'}')
tablehead = ' & '.join([r'\colhead{' + x.name + '}' for x in self.cols])
if 'units' in self.latex.keys():
tablehead += r'\\ ' + (self.splitter.join([ self.latex['units'].get(x.name, ' ') for x in self.cols]))
lines.append(r'\tablehead{' + tablehead + '}')
class AASTexData(LatexData):
'''In a `deluxetable` the data is enclosed in `\startdata` and `\enddata`
'''
data_start = r'\startdata'
data_end = r'\enddata'
def start_line(self, lines):
return find_latex_line(lines, self.data_start) + 1
def write(self, lines):
lines.append(self.data_start)
core.BaseData.write(self, lines)
lines.append(self.data_end)
add_dictval_to_list(self.latex, 'tablefoot', lines)
lines.append(r'\end{' + self.latex['tabletype'] + r'}')
class AASTexHeaderSplitter(LatexSplitter):
'''extract column names from a `deluxetable`
This splitter expects the following LaTeX code **in a single line**:
\tablehead{\colhead{col1} & ... & \colhead{coln}}
'''
def process_line(self, line):
"""extract column names from tablehead
"""
line = line.split('%')[0]
line = line.replace(r'\tablehead','')
line = line.strip()
if (line[0] =='{') and (line[-1] == '}'):
line = line[1:-1]
else:
raise core.InconsistentTableError(r'\tablehead is missing {}')
return line.replace(r'\colhead','')
def join(self, vals):
return ' & '.join([r'\colhead{' + str(x) + '}' for x in vals])
[docs]class AASTex(Latex):
'''Write and read AASTeX tables.
This class implements some AASTeX specific commands.
AASTeX is used for the AAS (American Astronomical Society)
publications like ApJ, ApJL and AJ.
It derives from the ``Latex`` reader and accepts the same
keywords. However, the keywords ``header_start``, ``header_end``,
``data_start`` and ``data_end`` in ``latexdict`` have no effect.
'''
def __init__(self, **kwargs):
Latex.__init__(self, **kwargs)
self.header = AASTexHeader()
self.data = AASTexData()
self.header.comment = '%|' + '|'.join([r'\\' + command for command in self.ignore_latex_commands])
self.header.splitter = AASTexHeaderSplitter()
self.data.splitter = LatexSplitter()
self.data.comment = self.header.comment
self.data.header = self.header
self.header.data = self.data
self.latex['tabletype'] = 'deluxetable'
# The latex dict drives the format of the table and needs to be shared
# with data and header
self.header.latex = self.latex
self.data.latex = self.latex